Machine learning-based MRI radiomics predict IL18 expression and overall survival of low-grade glioma patients

Machine Learning


  • Sung, H. et al. Global Cancer Statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J. Clin. 71, 209–249 (2021).

    Article 
    PubMed 

    Google Scholar 

  • Franceschi, E. et al. Rare primary central nervous system tumors in adults: an overview. Front. Oncol. 10, 996 (2020).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Louis, D. N. et al. The 2016 World Health Organization classification of tumors of the central nervous system: a summary. Acta Neuropathol. 131, 803–820 (2016).

    Article 
    PubMed 

    Google Scholar 

  • Diaz, M., Jo, J., Smolkin, M., Ratcliffe, S. J. & Schiff, D. Risk of venous thromboembolism in grade II-IV gliomas as a function of molecular subtype. Neurology 96, e1063–e1069 (2021).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Weller, M. et al. European Association for Neuro-Oncology (EANO) guideline on the diagnosis and treatment of adult astrocytic and oligodendroglial gliomas. Lancet Oncol. 18, e315–e329 (2017).

    Article 
    PubMed 

    Google Scholar 

  • Garlanda, C., Dinarello, C. A. & Mantovani, A. The interleukin-1 family: back to the future. Immunity 39, 1003–1018 (2013).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Mantovani, A., Dinarello, C. A., Molgora, M. & Garlanda, C. Interleukin-1 and related cytokines in the regulation of inflammation and immunity. Immunity 50, 778–795 (2019).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Nakanishi, K., Yoshimoto, T., Tsutsui, H. & Okamura, H. Interleukin-18 regulates both Th1 and Th2 responses. Annu. Rev. Immunol. 19, 423–474 (2001).

    Article 
    PubMed 

    Google Scholar 

  • Nakanishi, K. Unique action of Interleukin-18 on T cells and other immune cells. Front. Immunol. 9, 763 (2018).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Yasuda, K., Nakanishi, K. & Tsutsui, H. Interleukin-18 in health and disease. Int. J. Mol. Sci. 20, 649 (2019).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Zhou, T. et al. IL-18BP is a secreted immune checkpoint and barrier to IL-18 immunotherapy. Nature 583, 609–614 (2020).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Simpson, S., Kaislasuo, J., Guller, S. & Pal, L. Thermal stability of cytokines: a review. Cytokine 125, 154829 (2020).

    Article 
    PubMed 

    Google Scholar 

  • Zhang, J. et al. Triazoles as T(2)-exchange Magnetic Resonance Imaging contrast agents for the detection of Nitrilase activity. Chemistry 24, 15013–15018 (2018).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Cai, X. et al. N-Aryl Amides as chemical exchange saturation transfer Magnetic Resonance Imaging contrast agents. Chemistry 26, 11705–11709 (2020).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Makanyanga, J. et al. MRI texture analysis (MRTA) of T2-weighted images in Crohn’s disease may provide information on histological and MRI disease activity in patients undergoing ileal resection. Eur. Radiol. 27, 589–597 (2017).

    Article 
    PubMed 

    Google Scholar 

  • Li, M. et al. Computed tomography texture analysis to facilitate therapeutic decision making in hepatocellular carcinoma. Oncotarget 7, 13248–13259 (2016).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Korenchan, D. E. et al. (31)P spin-lattice and singlet order relaxation mechanisms in pyrophosphate studied by isotopic substitution, field shuttling NMR, and molecular dynamics simulation. Phys. Chem. Chem. Phys. 24, 24238–24245 (2022).

    Article 
    PubMed 

    Google Scholar 

  • Li, Z. et al. Texture-based classification of different single liver lesion based on SPAIR T2W MRI images. BMC Med. imaging 17, 42 (2017).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Park, J. E. et al. Radiomics prognostication model in glioblastoma using diffusion- and perfusion-weighted MRI. Sci. Rep. 10, 4250 (2020).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Choi, Y. S. et al. Incremental prognostic value of ADC histogram analysis over MGMT promoter methylation status in patients with glioblastoma. Radiology 281, 175–184 (2016).

    Article 
    PubMed 

    Google Scholar 

  • Kesari, S. et al. Phase II study of protracted daily temozolomide for low-grade gliomas in adults. J. Am. Assoc. Cancer Res. 15, 330–337 (2009).

    Google Scholar 

  • Claus, E. B. & Verhaak, R. G. W. Targeting IDH in low-grade glioma. N. Engl. J. Med. 389, 655–659 (2023).

    Article 
    PubMed 

    Google Scholar 

  • Leu, S., von Felten, S., Frank, S., Boulay, J. L. & Mariani, L. IDH mutation is associated with higher risk of malignant transformation in low-grade glioma. J. Neuro-Oncol. 127, 363–372 (2016).

    Article 

    Google Scholar 

  • Kinslow, C. J. et al. Association of MGMT promoter methylation with survival in low-grade and anaplastic gliomas after alkylating chemotherapy. JAMA Oncol. 9, 919–927 (2023).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Everhard, S. et al. MGMT methylation: a marker of response to temozolomide in low-grade gliomas. Ann. Neurol. 60, 740–743 (2006).

    Article 
    PubMed 

    Google Scholar 

  • Liu, S. et al. NK cell-based cancer immunotherapy: from basic biology to clinical development. J. Hematol. Oncol. 14, 7 (2021).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Chapman, N. M., Boothby, M. R. & Chi, H. Metabolic coordination of T cell quiescence and activation. Nat. Rev. Immunol. 20, 55–70 (2020).

    Article 
    PubMed 

    Google Scholar 

  • Berg, R. E., Cordes, C. J. & Forman, J. Contribution of CD8+ T cells to innate immunity: IFN-gamma secretion induced by IL-12 and IL-18. Eur. J. Immunol. 32, 2807–2816 (2002).

    Article 
    PubMed 

    Google Scholar 

  • Freeman, C. M. et al. Cytotoxic potential of lung CD8(+) T cells increases with chronic obstructive pulmonary disease severity and with in vitro stimulation by IL-18 or IL-15. J. Immunol.184, 6504–6513 (2010).

    Article 
    PubMed 

    Google Scholar 

  • Deswaerte, V. et al. Inflammasome adaptor ASC suppresses apoptosis of gastric cancer cells by an IL18-mediated inflammation-independent mechanism. Cancer Res. 78, 1293–1307 (2018).

    Article 
    PubMed 

    Google Scholar 

  • Jarry, A. et al. Role of the inflammasome of tumor cells in modulating the biology of Tumor Infiltrating Lymphocytes (TILs) in colorectal cancer. J. Clin. Oncol. 35, e23087-e23087 (2017).

  • Wang, X. et al. The prognostic value and immune correlation of IL18 expression and promoter methylation in renal cell carcinoma. Clin. Epigenet.15, 14 (2023).

    Article 

    Google Scholar 

  • American Association for Cancer Research. IL18 promotes MDSC-mediated immunosuppression in multiple myeloma. Cancer Discov. 8, OF12-OF12 (2018).

  • Bied, M., Ho, W. W., Ginhoux, F. & Blériot, C. Roles of macrophages in tumor development: a spatiotemporal perspective. Cell. Mol. Immunol. 20, 983–992 (2023).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Wang, L. J., Xue, Y. & Lou, Y. Tumor-associated macrophages related signature in glioma. Aging 14, 2720–2735 (2022).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Xu, C. et al. Origin, activation, and targeted therapy of glioma-associated macrophages. Front. Immunol. 13, 974996 (2022).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Lambin, P. et al. Radiomics: extracting more information from medical images using advanced feature analysis. Eur. J. Cancer 48, 441–446 (2012).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Lambin, P. et al. Radiomics: the bridge between medical imaging and personalized medicine. Nat. Rev. Clin. Oncol. 14, 749–762 (2017).

    Article 
    PubMed 

    Google Scholar 

  • Kumar, V. et al. Radiomics: the process and the challenges. Magn. Reson. Imaging 30, 1234–1248 (2012).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Gillies, R. J., Kinahan, P. E. & Hricak, H. Radiomics: images are more than pictures, they are data. Radiology 278, 563–577 (2016).

    Article 
    PubMed 

    Google Scholar 

  • Rios Velazquez, E. et al. Somatic mutations drive distinct imaging phenotypes in lung cancer. Cancer Res. 77, 3922–3930 (2017).

    Article 
    PubMed 

    Google Scholar 

  • Ameli, S. et al. Role of MRI-derived radiomics features in determining degree of tumor differentiation of hepatocellular carcinoma. Diagnostics12, 2386 (2022).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Liang, W. et al. Classification prediction of pancreatic cystic neoplasms based on radiomics deep learning models. BMC Cancer 22, 1237 (2022).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Song, J. et al. Non-small cell lung cancer: quantitative phenotypic analysis of CT images as a potential marker of prognosis. Sci. Rep. 6, 38282 (2016).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Liu, Z. et al. The applications of radiomics in precision diagnosis and treatment of oncology: opportunities and challenges. Theranostics 9, 1303–1322 (2019).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Petrick, L. M. & Shomron, N. AI/ML-driven advances in untargeted metabolomics and exposomics for biomedical applications. Cell Rep. Phys. Sci. 3, 100978 (2022).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Toh, T. S., Dondelinger, F. & Wang, D. Looking beyond the hype: applied AI and machine learning in translational medicine. EBioMedicine 47, 607–615 (2019).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Yu, Y. et al. Development and validation of a preoperative magnetic resonance imaging radiomics-based signature to predict axillary lymph node metastasis and disease-free survival in patients with early-stage breast cancer. JAMA Netw. Open 3, e2028086 (2020).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Lv, L. et al. Radiomic analysis for predicting prognosis of colorectal cancer from preoperative (18)F-FDG PET/CT. J. Transl. Med. 20, 66 (2022).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Amatya, A. K. et al. Subgroup analyses in oncology trials: regulatory considerations and case examples. J. Am. Assoc. Cancer Res. 27, 5753–5756 (2021).

    Google Scholar 

  • Hänzelmann, S., Castelo, R. & Guinney, J. GSVA: gene set variation analysis for microarray and RNA-seq data. BMC Bioinform. 14, 7 (2013).

    Article 

    Google Scholar 

  • Hong, F. et al. Single-cell analysis of the pan-cancer immune microenvironment and scTIME portal. Cancer Immunol. Res. 9, 939–951 (2021).

    Article 
    PubMed 

    Google Scholar 

  • Yoshihara, K. et al. Inferring tumour purity and stromal and immune cell admixture from expression data. Nat. Commun. 4, 2612 (2013).

    Article 
    PubMed 

    Google Scholar 

  • Jiang, P. et al. Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response. Nat. Med. 24, 1550–1558 (2018).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Mandrekar, J. N. Receiver operating characteristic curve in diagnostic test assessment. J. Thorac. Oncol.5, 1315–1316 (2010).

    Article 
    PubMed 

    Google Scholar 

  • Zhang, L. et al. Multicenter clinical radiomics-integrated model based on [(18)F]FDG PET and multi-modal MRI predict ATRX mutation status in IDH-mutant lower-grade gliomas. Eur. Radiol. 33, 872–883 (2023).

    Article 
    PubMed 

    Google Scholar 

  • Jung, S. H. Stratified Fisher’s exact test and its sample size calculation. Biom. J. 56, 129–140 (2014).

    Article 
    PubMed 

    Google Scholar 

  • Ballenberger, N., Lluis, A., von Mutius, E., Illi, S. & Schaub, B. Novel statistical approaches for non-normal censored immunological data: analysis of cytokine and gene expression data. PloS ONE 7, e46423 (2012).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Seiler, R. et al. Impact of molecular subtypes in muscle-invasive bladder cancer on predicting response and survival after neoadjuvant chemotherapy. Eur. Urol. 72, 544–554 (2017).

    Article 
    PubMed 

    Google Scholar 



  • Source link

    Leave a Reply

    Your email address will not be published. Required fields are marked *