Towards machine learning-based quantitative hyperspectral image guidance for brain tumor resection

Machine Learning


  • Stepp, H. & Stummer, W. 5-ALA in the management of malignant glioma. Lasers Surg. Med 50, 399–419 (2018).

    Article 
    PubMed 

    Google Scholar 

  • Stummer, W. et al. Fluorescence-guided surgery with 5-aminolevulinic acid for resection of malignant glioma: a randomised controlled multicentre phase III trial. Lancet Oncol. 7, 392–401 (2006).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Schucht, P. et al. Gross total resection rates in contemporary glioblastoma surgery: results of an institutional protocol combining 5-aminolevulinic acid intraoperative fluorescence imaging and brain mapping. Neurosurgery 71, 927–935 (2012).

    Article 
    PubMed 

    Google Scholar 

  • Widhalm, G. et al. The value of visible 5-ALA fluorescence and quantitative protoporphyrin IX analysis for improved surgery of suspected low-grade gliomas. J. Neurosurg. 133, 79–88 (2019).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Valdés, P. A. et al. Quantitative fluorescence using 5-aminolevulinic acid-induced protoporphyrin IX biomarker as a surgical adjunct in low-grade glioma surgery. J. Neurosurg. 123, 771–780 (2015).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Stummer, W. et al. Fluorescence-guided resection of glioblastoma multiforme by using 5-aminolevulinic acid-induced porphyrins: A prospective study in 52 consecutive patients. J. Neurosurg. 93, 1003–1013 (2000).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Roberts, D. W. et al. Coregistered fluorescence-enhanced tumor resection of malignant glioma: relationships between δ-aminolevulinic acid–induced protoporphyrin IX fluorescence, magnetic resonance imaging enhancement, and neuropathological parameters. Clin. Artic. J. Neurosurg. 114, 595–603 (2011).

    Article 

    Google Scholar 

  • Valdes, P. A., Millesi, M., Widhalm, G. & Roberts, D. W. 5-aminolevulinic acid induced protoporphyrin IX (ALA-PpIX) fluorescence guidance in meningioma surgery. J. Neurooncol. 141, 555–565 (2019).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Kajimoto, Y. et al. Use of 5-aminolevulinic acid in fluorescence-guided resection of meningioma with high risk of recurrence: Case report. J. Neurosurg. 106, 1070–1074 (2007).

    Article 
    PubMed 

    Google Scholar 

  • Motekallemi, A. et al. The current status of 5-ALA fluorescence-guided resection of intracranial meningiomas—a critical review. Neurosurg. Rev. 38, 619–628 (2015).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Valdes, P. A. et al. 5-Aminolevulinic acid-induced protoporphyrin IX fluorescence in meningioma: Qualitative and quantitative measurements in Vivo. Neurosurgery 10, 74–82 (1982).

    Google Scholar 

  • Suero Molina, E., Kaneko, S., Black, D. & Stummer, W. 5-Aminolevulinic acid-induced porphyrin contents in various brain tumors: implications regarding imaging device design and their validation. Neurosurgery 89, 1132–1140 (2021).

    Article 
    PubMed 

    Google Scholar 

  • Leunig, A. et al. Detection of squamous cell carcinoma of the oral cavity by imaging 5-Aminolevulinic acid-induced Protoporphyrin IX fluorescence. Laryngoscope 110, 78–83 (2000).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Betz, C. S. et al. A comparative study of normal inspection, autofluorescence and 5-ALA-induced PPIX fluorescence for oral cancer diagnosis. Int J. Cancer 97, 245–252 (2002).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Harada, Y., Murayama, Y., Takamatsu, T., Otsuji, E. & Tanaka, H. 5-Aminolevulinic acid-induced Protoporphyrin IX fluorescence imaging for tumor detection: recent advances and challenges. Int. J. Mol. Sci. 23, 6478 (2022).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Koenig, F. et al. Diagnosis of bladder carcinoma using protoporphyrin IX fluorescence induced by 5-aminolaevulinic acid. BJU Int. 83, 129–135 (1999).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Van Der Beek, N., De Leeuw, J., Demmendal, C., Bjerring, P. & Neumann, H. A. M. PpIX fluorescence combined with auto-fluorescence is more accurate than PpIX fluorescence alone in fluorescence detection of non-melanoma skin cancer: An intra-patient direct comparison study. Lasers Surg. Med. 44, 271–276 (2012).

    Article 
    PubMed 

    Google Scholar 

  • Kennedy, J. C. & Pottier, R. H. New trends in photobiology: Endogenous protoporphyrin IX, a clinically useful photosensitizer for photodynamic therapy. J. Photochem. Photobiol. B 14, 275–292 (1992).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Schipmann, S. et al. Combination of ALA-induced fluorescence-guided resection and intraoperative open photodynamic therapy for recurrent glioblastoma: case series on a promising dual strategy for local tumor control. J. Neurosurg. 134, 426–436 (2020).

    Article 
    PubMed 

    Google Scholar 

  • Sachar, M., Anderson, K. E. & Ma, X. Protoporphyrin IX: the Good, the Bad, and the Ugly. J. Pharmacol. Exp. Ther. 356, 267–275 (2016).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • McNicholas, K., MacGregor, M. N. & Gleadle, J. M. In order for the light to shine so brightly, the darkness must be present—why do cancers fluoresce with 5-aminolaevulinic acid? Br. J. Cancer 121, 631–639 (2019).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Olivo, M. & Wilson, B. C. Mapping ALA-induced PPIX fluorescence in normal brain and brain tumour using confocal fluorescence microscopy. Int J. Oncol. 25, 37–45 (2004).

    CAS 
    PubMed 

    Google Scholar 

  • Valdés, P. A. et al. Deferoxamine iron chelation increases delta-aminolevulinic acid induced protoporphyrin IX in xenograft glioma model. Photochem Photobiol. 86, 471–475 (2010).

    Article 
    PubMed 

    Google Scholar 

  • Mazurek, M., Szczepanek, D., Orzyłowska, A. & Rola, R. Analysis of factors affecting 5-ALA fluorescence intensity in visualizing glial tumor cells-literature review. Int. J. Mol. Sci. 23, 926 (2022).

  • Harmatys, K. M., Musso, A. J., Clear, K. J. & Smith, B. D. Small molecule additive enhances cell uptake of 5-aminolevulinic acid and conversion to protoporphyrin IX. Photochem Photobiol. Sci. 15, 1408 (2016).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Hagiya, Y. et al. Pivotal roles of peptide transporter PEPT1 and ATP-binding cassette (ABC) transporter ABCG2 in 5-aminolevulinic acid (ALA)-based photocytotoxicity of gastric cancer cells in vitro. Photodiagn. Photodyn. Ther. 9, 204–214 (2012).

    Article 
    CAS 

    Google Scholar 

  • Kaneko, S. et al. Fluorescence real-time kinetics of protoporphyrin IX after 5-ALA administration in low-grade glioma. J. Neurosurg. 1, 1–7 (2021).

    Google Scholar 

  • Lichtman, J. W. & Conchello, J. A. Fluorescence microscopy. Nat. Methods 2, 910–919 (2005).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Vollmer, F., Rettig, W. & Birckner, E. Photochemical mechanisms producing large fluorescence stokes shifts. J. Fluoresc. 4, 65–69 (1994).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Suero Molina, E., Stögbauer, L., Jeibmann, A., Warneke, N. & Stummer, W. Validating a new generation filter system for visualizing 5-ALA-induced PpIX fluorescence in malignant glioma surgery: a proof of principle study. Acta Neurochir. 162, 785–793 (2020).

    Article 
    PubMed 

    Google Scholar 

  • Stummer, W. et al. Technical principles for protoporphyrin-IX-fluorescence guided microsurgical resection of malignant glioma tissue. Acta Neurochir. 140, 995–1000 (1998).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Bottiroli, G. et al. Brain tissue autofluorescence: an aid for intraoperative delineation of tumor resection margins. Cancer Detect. Prev. 22, 330–339 (1998).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Mochizuki, Y., Park, M. K., Mori, T. & Kawashima, S. The difference in autofluorescence features of lipofuscin between brain and adrenal. 12, 283–288 https://doi.org/10.2108/zsj.12.283 (1995).

  • Lifante, J. et al. The near-infrared autofluorescence fingerprint of the brain. J. Biophotonics 13, e202000154 (2020).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Black, D. et al. Characterization of autofluorescence and quantitative protoporphyrin IX biomarkers for optical spectroscopy-guided glioma surgery. Sci. Rep. 11, 1–12 (2021).

    Article 

    Google Scholar 

  • Alston, L. et al. Spectral complexity of 5-ALA induced PpIX fluorescence in guided surgery: a clinical study towards the discrimination of healthy tissue and margin boundaries in high and low grade gliomas. Biomed. Opt. Express 10, 2478 (2019).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Montcel, B., Mahieu-Williame, L., Armoiry, X., Meyronet, D. & Guyotat, J. Two-peaked 5-ALA-induced PpIX fluorescence emission spectrum distinguishes glioblastomas from low grade gliomas and infiltrative component of glioblastomas. Biomed. Opt. Express 4, 548 (2013).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Li, Y., Rey-Dios, R., Roberts, D. W., Valdés, P. A. & Cohen-Gadol, A. A. Intraoperative fluorescence-guided resection of high-grade gliomas: a comparison of the present techniques and evolution of future strategies. World Neurosurg. 82, 175–185 https://doi.org/10.1016/j.wneu.2013.06.014 (2014).

  • Alston, L., Rousseau, D., Hebert, M. & Mahieu-Williame, L. Nonlinear relation between concentration and fluorescence emission of protoporphyrin IX in calibrated phantoms. J. Biomed. Opt. 23, 1 (2018).

    Article 
    PubMed 

    Google Scholar 

  • Kaneko, S., Suero Molina, E., Ewelt, C., Warneke, N. & Stummer, W. Fluorescence-based measurement of real-time kinetics of Protoporphyrin IX after 5-Aminolevulinic acid administration in human in situ malignant gliomas. Clin. Neurosurg. 85, E739–E746 (2019).

    Article 

    Google Scholar 

  • Molina, E. S., Black, D., Kaneko, S., Müther, M. & Stummer, W. Double dose of 5-aminolevulinic acid and its effect on protoporphyrin IX accumulation in low-grade glioma. J. Neurosurg. 137, 943–952 (2022).

    Article 
    CAS 

    Google Scholar 

  • Valdés, P. A. et al. A spectrally constrained dual-band normalization technique for protoporphyrin IX quantification in fluorescence-guided surgery. Opt. Lett. 37, 1817 (2012).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Bondy, M. L. et al. Brain tumor epidemiology: consensus from the Brain Tumor Epidemiology Consortium (BTEC). Cancer 113, 1953 (2008).

    Article 
    PubMed 

    Google Scholar 

  • Zacharaki, E. I. et al. Classification of brain tumor type and grade using MRI texture and shape in a machine learning scheme. Magn. Reson Med. 62, 1609–1618 (2009).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Abiwinanda, N., Hanif, M., Hesaputra, S. T., Handayani, A. & Mengko, T. R. Brain tumor classification using convolutional neural network. IFMBE Proc. 68, 183–189 (2019).

    Article 

    Google Scholar 

  • Omuro, A. & DeAngelis, L. M. Glioblastoma and other malignant gliomas: a clinical review. JAMA 310, 1842–1850 (2013).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Torp, S. H., Solheim, O. & Skjulsvik, A. J. The WHO 2021 Classification of Central Nervous System tumours: a practical update on what neurosurgeons need to know-a minireview. Acta Neurochir. 164, 2453–2464 (2022).

    Article 
    PubMed 

    Google Scholar 

  • Weller, M. et al. Glioma. Nat. Rev. Dis. Prim. 1, 1–18 (2015).

    Google Scholar 

  • Louis, D. N. et al. The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary. Acta Neuropathologica. 131, 803–820https://doi.org/10.1007/s00401-016-1545-1 (2016).

  • Guo, J. et al. Biological roles and therapeutic applications of IDH2 mutations in human cancer. Front. Oncol. 11, 644857 (2021).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Ahammed Muneer, K. V., Rajendran, V. R. & Paul Joseph, K. Glioma tumor grade identification using artificial intelligent techniques. J. Med Syst. 43, 1–12 (2019).

    Article 

    Google Scholar 

  • Jose, L. et al. Artificial intelligence-assisted classification of gliomas using whole-slide images. Arch. Pathol. Lab. Med. https://doi.org/10.5858/ARPA.2021-0518-OA (2022).

  • Ferrer, V. P., Moura Neto, V. & Mentlein, R. Glioma infiltration and extracellular matrix: Key players and modulators. Glia 66, 1542–1565 (2018).

    Article 
    PubMed 

    Google Scholar 

  • Kubben, P. L. et al. Intraoperative MRI-guided resection of glioblastoma multiforme: A systematic review. Lancet Oncol. 12, 1062–1070 (2011).

    Article 
    PubMed 

    Google Scholar 

  • Nabavi, A. et al. Serial intraoperative magnetic resonance imaging of brain shift. Neurosurgery 48, 787–798 (2001).

  • Laws, E. R. et al. Survival following surgery and prognostic factors for recently diagnosed malignant glioma: data from the Glioma Outcomes Project. J. Neurosurg. 99, 467–473 (2003).

    Article 
    PubMed 

    Google Scholar 

  • Li, Y. M., Suki, D., Hess, K. & Sawaya, R. The influence of maximum safe resection of glioblastoma on survival in 1229 patients: Can we do better than gross-total resection? J. Neurosurg. 124, 977–988 (2016).

    Article 
    PubMed 

    Google Scholar 

  • Leclerc, P. et al. Machine learning-based prediction of glioma margin from 5-ALA induced PpIX fluorescence spectroscopy. Sci. Rep. 10, 1–9 (2020).

    Article 

    Google Scholar 

  • Walke, A. et al. Challenges in, and recommendations for, hyperspectral imaging in ex vivo malignant glioma biopsy measurements. Sci. Rep. 13, 3829 (2023).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Liberti, M. V. & Locasale, J. W. The Warburg effect: how does it benefit cancer cells? Trends Biochem Sci. 41, 211–218 (2016).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Wold, S., Esbensen, K. & Geladi, P. Principal component analysis. Chemometr. Intell. Lab. Syst. 2, 37–52 (1987).

    Article 
    CAS 

    Google Scholar 

  • Black, D. et al. Deep learning-based correction and unmixing of hyperspectral images for brain tumor surgery. Preprint at https://doi.org/10.48550/arXiv.2402.03761 (2024).

  • Alshiekh Nasany, R. & de la Fuente, M. I. Therapies for IDH-Mutant Gliomas. Curr. Neurol. Neurosci. Rep. 23, 225–233 (2023).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Van Den Bent, M. J. Interobserver variation of the histopathological diagnosis in clinical trials on glioma: a clinician’s perspective. Acta Neuropathol. 120, 297–304 (2010).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Di Ieva, A. Angioarchitectural morphometrics of brain tumors: are there any potential histopathological biomarkers? Microvasc. Res. 80, 522–533 (2010).

    Article 
    PubMed 

    Google Scholar 

  • Fürtjes, G. et al. Intraoperative microscopic autofluorescence detection and characterization in brain tumors using stimulated Raman histology and two-photon fluorescence. Front Oncol. 13, 1146031 (2023).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Black, D. et al. A spectral library and method for sparse unmixing of hyperspectral images in fluorescence guided resection of brain tumors. Biomedical Optics Express (2024) (In Press).

  • Stone, J. V. Independent component analysis: an introduction. Trends Cogn. Sci. 6, 59–64 (2002).

    Article 
    PubMed 

    Google Scholar 

  • Biau, G. & Scornet, E. A random forest guided tour. Test 25, 197–227 (2016).

    Article 

    Google Scholar 

  • Larose, D. T. & Larose, C. D. k -nearest neighbor algorithm. Discov. Knowl. Data 149–164 https://doi.org/10.1002/9781118874059.CH7 (2014).

  • Noble, W. S. What is a support vector machine? Nat. Biotechnol. 24, 1565–1567 (2006).

    Article 
    CAS 
    PubMed 

    Google Scholar 

  • Murtagh, F. Multilayer perceptrons for classification and regression. Neurocomputing 2, 183–197 (1991).

    Article 

    Google Scholar 

  • Freund, Y. & Schapire, R. E. A Short Introduction to Boosting. J. Jpn. Soc. Artif. Intell. 14, 771–780 (1999).

    Google Scholar 



  • Source link

    Leave a Reply

    Your email address will not be published. Required fields are marked *